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Welcome to Cytoscape 2.x at Open Tutorials

The purpose of this portal is to distribute tutorial materials for Cytoscape 2.x and Cytoscape 2.x plugins.

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support, scripting, and connection with databases.



Available Tutorials


Bullet.png Introduction to Cytoscape, part 1

Bullet.png Introduction to Cytoscape, part 2

Bullet.png Filtering and Editing

Bullet.png Basic Expression Analysis - Yeast

Bullet.png Basic Expression Analysis - Human

Bullet.png Network Loading and ID Mapping


Bullet.png Cytoscape Developers Tutorial


Bullet.png Assorted Cytoscape Plugins

Bullet.png Agilent Literature Search

Bullet.png MiMiPpi Discovery

Bullet.png Structure Visualization and Structure Function Linkage Database

Bullet.png Google Charts Plugin - Creating Pie Charts on Nodes

Analysis plugins

Bullet.png Cluster Maker

Bullet.png Cluster Maker BMC Bioinformatics Scenario 1

Bullet.png Cluster Maker BMC Bioinformatics Scenario 2

Bullet.png Cluster Maker BMC Bioinformatics Scenario 3

Bullet.png DomainGraph

Bullet.png MCODE Plugin Demo

Bullet.png Network Analyzer

Layout plugins

Bullet.png Community Structure Layout

Bullet.png Cytoscape Cerebral Plugin

Bullet.png Power Graph Analysis with CyOog

3.0 tutorials

Bullet.png Cytoscape 3.0 Tutorials


Other Resources


Latest News

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