Portal:Cytoscape3
From OpenTutorials
Welcome to Cytoscape 3.0 at Open Tutorials
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The purpose of this portal is to distribute tutorial materials for Cytoscape 3.0 and Cytoscape Apps. Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. Many apps are available for network and molecular profiling analyses, new layouts, additional file format support, scripting, and connection with databases. | 
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Available Tutorials
| App Development
For an introduction to Cytoscape 3.0 and overview of App development, see the related wiki pages. Here you will find detailed tutorials for developing Cytoscape Apps.
3.0 App Tutorials
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| Cytoscape 2.x |
Other Resources
Latest News
- GeneMANIA Cytoscape plugin 2.5 now available
- We are pleased to announce the release of version 2.5 of the GeneMANIA Cytoscape plugin and command line tools for really fast gene function prediction. This release contains bug fixes and no new features. Extend and analyze your gene lists using our database of over 260 million interactions spanning 1,400 networks. You can also perform predictions on [?]
- Cytoscape release 2.8.3!
- Hi Everyone,
The Cytoscape team is proud to announce the release of Cytoscape 2.8.3. This release includes a few bug fixes and usability improvements:
- VizMapper fixes - We fixed a few problems with the VizMapper that were disappearing visual properties and otherwise making the VizMapper difficult [?]
- Announcing Multilevel Layout and Biological Evaluation plugins
- We are happy to announce the release of our Multilevel Layout and Biological Evaluation plugins. The operation of these plugins in a wide variety of both physical and genetic interaction networks is described in the recent paper: [link]
Multilevel Layout method applies the conventional layout algorithms [?]
